Basic Information
Locus ID:
gene_6429
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 19391398 | 19395012 | + | gene_6429 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 112,045.69 Da | 31.92 | 101.46 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 560 | 597 | 2.4E-6 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 715 | 988 | 1.4E-47 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 106 | 165 | 5.4E-9 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 417 | 477 | 3.4E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 179 | 237 | 1.1E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 489 | 549 | 3.9E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 31 | 78 | 2.2E-9 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 43 | 366 | 1.25E-56 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 705 | 991 | 3.14E-71 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 263 | 603 | 8.63E-70 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 389 | 630 | 6.7E-66 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 799 | 1016 | 4.5E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 289 | 388 | 4.1E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 189 | 288 | 6.3E-31 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 713 | 798 | 1.5E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 30 | 188 | 2.8E-38 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 512 | 536 | 270.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 272 | 296 | 59.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 440 | 464 | 13.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 104 | 127 | 35.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 200 | 224 | 48.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 713 | 991 | 1.7E-34 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 128 | 151 | 72.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 560 | 583 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 320 | 344 | 49.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 713 | 998 | 38.958263 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 841 | 853 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 996 | 1028 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 992 | 1028 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28650.1 | Leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_010667968.1 | MDIS1-interacting receptor like kinase 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9M0G7 | MDIS1-interacting receptor like kinase 1 OS=Arabidopsis thaliana OX=3702 GN=MIK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8B1V4 | Protein kinase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_013360 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology