Basic Information
Locus ID:
gene_6425
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 19298803 | 19348042 | + | gene_6425 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.09 | 248,307.56 Da | 38.59 | 103.12 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 1319 | 1519 | 1.68965E-103 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1960 | 2180 | 1.95771E-125 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 1006 | 1293 | 1.27456E-108 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 1643 | 1937 | 5.42321E-97 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 1009 | 1273 | 7.0E-29 | IPR011527 |
| Pfam | PF00069 | Protein kinase domain | 393 | 639 | 2.7E-39 | IPR000719 |
| Pfam | PF00005 | ABC transporter | 1337 | 1471 | 4.5E-19 | IPR003439 |
| Pfam | PF01476 | LysM domain | 231 | 262 | 0.056 | IPR018392 |
| Pfam | PF00005 | ABC transporter | 1979 | 2127 | 4.9E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 1650 | 1887 | 1.1E-27 | IPR011527 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 392 | 643 | 1.01E-64 | IPR011009 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 1638 | 1944 | 1.24E-49 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1316 | 1541 | 7.42E-55 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 994 | 1297 | 3.4E-41 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1953 | 2191 | 3.58E-67 | IPR027417 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 451 | 654 | 5.4E-56 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 1946 | 2198 | 4.9E-81 | IPR027417 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 360 | 450 | 1.6E-12 | - |
| Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase, domain 1 | 5 | 49 | 4.8E-9 | IPR015422 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1604 | 1943 | 4.7E-61 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1302 | 1564 | 1.2E-75 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 977 | 1301 | 4.3E-58 | IPR036640 |
| SMART | SM00257 | LysM_2 | 163 | 210 | 1.9 | IPR018392 |
| SMART | SM00220 | serkin_6 | 385 | 650 | 3.1E-20 | IPR000719 |
| SMART | SM00257 | LysM_2 | 230 | 270 | 0.012 | IPR018392 |
| SMART | SM00382 | AAA_5 | 1346 | 1527 | 9.5E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1988 | 2173 | 4.7E-15 | IPR003593 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 229 | 276 | 8.921906 | IPR018392 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 1008 | 1285 | 39.383698 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1962 | 2196 | 17.960649 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1319 | 1542 | 22.902601 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 1645 | 1915 | 35.253857 | IPR011527 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 325 | 650 | 32.060871 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 494 | 506 | - | IPR008271 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 1444 | 1458 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1600 | 1619 | - | - |
| Coils | Coil | Coil | 1597 | 1621 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_021848338.1 | ABC transporter C family member 5-like [Spinacia oleracea] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803M957 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology