Basic Information
Locus ID:
gene_6405
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 50634555 | 50658127 | - | gene_6405 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.31 | 55,762.38 Da | 55.70 | 82.96 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 176 | 461 | 4.81043E-138 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 177 | 461 | 2.1E-39 | IPR001394 |
| Pfam | PF01753 | MYND finger | 90 | 127 | 3.8E-11 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 86 | 132 | 7.67E-12 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 173 | 461 | 3.14E-76 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 166 | 469 | 1.5E-81 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 81 | 133 | 6.4E-13 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 90 | 127 | 12.224898 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 177 | 490 | 43.321983 | IPR028889 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 90 | 127 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 178 | 193 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_021864530.1 | ubiquitin carboxyl-terminal hydrolase 18-like [Spinacia oleracea] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9R6D3 | Ubiquitin carboxyl-terminal hydrolase 18-like OS=Spinacia oleracea OX=3562 GN=SOVF_107080 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology