Basic Information
Locus ID:
gene_6288
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Inactive serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 16037468 | 16058519 | + | gene_6288 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 86,403.37 Da | 39.94 | 87.36 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48371 | ARM repeat | 292 | 554 | 7.68E-31 | IPR016024 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 58 | 286 | 8.44E-17 | IPR011009 |
| Gene3D | G3DSA:1.25.10.10 | - | 281 | 559 | 1.3E-81 | IPR011989 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 12 | 106 | 2.0E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 108 | 280 | 1.5E-25 | - |
| SMART | SM00220 | serkin_6 | 4 | 283 | 0.0043 | IPR000719 |
| ProSiteProfiles | PS50077 | HEAT repeat profile. | 522 | 560 | 9.056 | IPR021133 |
| ProSiteProfiles | PS50077 | HEAT repeat profile. | 365 | 403 | 9.1684 | IPR021133 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 2 | 283 | 13.276787 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 632 | 655 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 684 | 716 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 677 | 800 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 632 | 652 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40730.1 | Protein kinase family protein with ARM repeat domain. | 0 |
| RefSeq | XP_010667551.2 | N-terminal kinase-like protein isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q55GS2 | Probable inactive serine/threonine-protein kinase scy1 OS=Dictyostelium discoideum OX=44689 GN=scy1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0J8B2T1 | Protein kinase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_009560 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg14185, jg187, jg2490 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6288 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033292 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59629, Sbi_jg63009 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23877 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00025938, GOSA_00027415 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl03108, Sgl08230, Sgl68709 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015561, gene:ENSEOMG00000020685 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0008360, CQ.Regalona.r1.2BG0009460 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30178150 |
| Apiaceae | Apium graveolens | 4 | Ag11G04116, Ag6G02106, Ag6G02107, Ag6G02108 |
| Arecaceae | Cocos nucifera | 3 | COCNU_16G005860, scaffold036382G000020 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702143, gene-LOC103722166 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1621.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G02128 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G40730.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016269m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g23040.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g004680.2N, BniB06g000270.2N, BniB08g026340.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0587 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0691 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g01930 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0206s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g02870 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-8162, nbisL1-mrna-8163 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1683 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021617 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23687 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3688, BH02.3269, CH02.3976 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0037980, gene-QOZ80_1BG0087980 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0297410.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_055698 |
| Poaceae | Oryza coarctata | 2 | Oco01G023410, Oco02G024170 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g60440.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G317800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0601809 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G006240, Chr03G018860, Chr05G027130 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G549000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG049440, gene_TRIDC3BG055710 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G342800.1, TraesCS3B02G375000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb149610_P003, Zm00001eb368920_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31445 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11418 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.784, evm.TU.LG11.1716, evm.TU.LG12.942 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g08560, gene.Posoc04g09950 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.303 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14117 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12667 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14263 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.174 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010010 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-425 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18911 |
| Salicaceae | Populus euphratica | 2 | populus_peu16355, populus_peu19148 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132611858, gene-LOC132640446 |
| Solanaceae | Solanum chilense | 2 | SOLCI002951500, SOLCI006470100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107020541, gene-LOC107023759 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5334 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G2385 |
| Zosteraceae | Zostera marina | 1 | Zosma01g18080.v3.1 |