Basic Information
Locus ID:
gene_6284
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
TIR1
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 15873650 | 15877912 | + | gene_6284 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 69,658.27 Da | 45.73 | 99.84 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 63 | 109 | 1.3E-26 | IPR041101 |
| Pfam | PF18511 | F-box | 5 | 44 | 3.7E-20 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 27 | 531 | 1.08E-36 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 37 | 6.54E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 42 | 3.7E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 43 | 573 | 2.3E-187 | IPR032675 |
| SMART | SM00256 | fbox_2 | 6 | 47 | 3.6E-5 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 126 | 151 | 48.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 310 | 333 | 11.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 368 | 392 | 18.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 152 | 189 | 400.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 101 | 125 | 290.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 477 | 501 | 410.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 428 | 451 | 120.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_021651512.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Hevea brasiliensis] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9ETX1 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology