Basic Information
Locus ID:
gene_622
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Histone-lysine n-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 15189719 | 15200183 | - | gene_622 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 54,801.90 Da | 39.35 | 85.71 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05158 | RNA polymerase Rpc34 subunit | 20 | 131 | 1.3E-25 | IPR007832 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 20 | 90 | 3.54E-8 | IPR036390 |
| Gene3D | G3DSA:1.10.10.10 | - | 1 | 83 | 5.9E-15 | IPR036388 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 490 | - | - |
| Coils | Coil | Coil | 152 | 172 | - | - |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
Reaction:
R03875 (Protein lysine + S-Adenosyl-L-methionine <=> Protein N6-methyl-L-lysine + S-Adenosyl-L-homocysteine)
R03938 (S-Adenosyl-L-methionine + Histone-L-lysine <=> S-Adenosyl-L-homocysteine + Histone N6-methyl-L-lysine)
R04866 (S-Adenosyl-L-methionine + Protein N6-methyl-L-lysine <=> S-Adenosyl-L-homocysteine + Protein N6,N6-dimethyl-L-lysine)
R04867 (S-Adenosyl-L-methionine + Protein N6,N6-dimethyl-L-lysine <=> S-Adenosyl-L-homocysteine + Protein N6,N6,N6-trimethyl-L-lysine)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02020.2 | - | 0 |
| RefSeq | XP_010679389.1 | histone-lysine N-methyltransferase EZA1 isoform X4 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8S4P4 | Histone-lysine N-methyltransferase EZ3 OS=Zea mays OX=4577 GN=EZ3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R327 | [histone H3]-lysine(27) N-trimethyltransferase OS=Spinacia oleracea OX=3562 GN=SOVF_112330 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg36957, jg5577 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_19264, gene_622 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g121860 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31325, Sbi_jg57961 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25586 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004474 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54529, Sgl59870 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006201, gene:ENSEOMG00000021214 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0009560, CQ.Regalona.r1.5BG0028630 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30127940 |
| Apiaceae | Apium graveolens | 2 | Ag1G01146, Ag9G01580 |
| Arecaceae | Cocos nucifera | 2 | scaffold010820G000020, scaffold012968G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103724044 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.1360.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G23041 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G23710.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005351m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g23520.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g076810.2N, BniB07g040580.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0311 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g12140 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0099s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g21500 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.463 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003140, Pov_00013573 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.2225, AH06.2226, BH06.2009, BH06.2010, CH06.2249 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0497900 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.7HG0719600.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_034960 |
| Poaceae | Oryza coarctata | 1 | Oco12G012520 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g40110.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G184000, gene-BS78_10G184400 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G029820, Chr05G007490, Chr0G008060 |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G637700, Tel7E01G637800 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC7AG052520, gene_TRIDC7BG044950 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS7A02G376000.1, TraesCS7A02G376100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb276730_P001, Zm00001eb356740_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10090 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30783 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG09.1261 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g03170, gene.Posoc05g03210 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1182 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14684, nbisL1-mrna-6818 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14849 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21751 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000004l.134 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004087 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16335 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21384 |
| Salicaceae | Populus euphratica | 5 | populus_peu04478, populus_peu04517, populus_peu04536 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132602065, gene-LOC132610636, gene-LOC132621960 |
| Solanaceae | Solanum chilense | 1 | SOLCI001877000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026877 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.19266_chr07_-, gene_16144 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G1029, TC09G0526 |
| Zosteraceae | Zostera marina | 1 | Zosma05g05360.v3.1 |