Basic Information
Locus ID:
gene_6128
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 8682090 | 8687200 | + | gene_6128 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 137,845.16 Da | 37.34 | 102.92 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 513 | 572 | 1.3E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 224 | 283 | 1.5E-6 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 961 | 1239 | 8.0E-46 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 33 | 67 | 1.9E-7 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 345 | 404 | 5.6E-8 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 656 | 676 | 1.1 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 324 | 668 | 3.69E-66 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 579 | 865 | 2.04E-55 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 933 | 1241 | 1.13E-72 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 83 | 427 | 6.51E-71 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 386 | 479 | 9.5E-28 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 918 | 1034 | 3.8E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 579 | 870 | 2.8E-83 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 186 | 287 | 3.2E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 480 | 578 | 3.7E-29 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 32 | 185 | 6.5E-43 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1035 | 1254 | 1.4E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 288 | 385 | 8.5E-31 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 102 | 128 | 47.0 | - |
| SMART | SM00220 | serkin_6 | 956 | 1242 | 3.7E-31 | IPR000719 |
| SMART | SM00365 | LRR_sd22_2 | 630 | 662 | 320.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 511 | 540 | 77.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 559 | 581 | 610.0 | - |
| SMART | SM00369 | LRR_typ_2 | 318 | 342 | 33.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 678 | 702 | 22.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 294 | 317 | 94.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 126 | 150 | 310.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 703 | 726 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 559 | 583 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 391 | 415 | 59.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 799 | 823 | 40.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 391 | 417 | 26.0 | - |
| SMART | SM00369 | LRR_typ_2 | 246 | 270 | 7.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 750 | 774 | 31.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 174 | 198 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 439 | 463 | 400.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 630 | 654 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 487 | 511 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 102 | 125 | 85.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 956 | 1246 | 39.862839 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1086 | 1098 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 962 | 985 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 246 | 259 | 7.4E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 105 | 118 | 7.4E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20140.1 | Leucine-rich repeat transmembrane protein kinase. Encodes GASSHO1 (GSO1), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO1 and a homolog GSO2 (At5g44700) are required for the formation of a normal epidermal surface during embryogenesis. | 0 |
| RefSeq | XP_010688659.1 | LRR receptor-like serine/threonine-protein kinase GSO1 [Beta vulgaris subsp. vulgaris] | 0 |
| C0LGQ5 | LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana OX=3702 GN=GSO1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803N7Y0 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20940 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6128 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036301 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g202710 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg27650, Sbi_jg32801 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7675 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027425 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl12227, Sgl12234, Sgl12235, Sgl12308, Sgl17459, Sgl17591 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016888, gene:ENSEOMG00000035584 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0019220, CQ.Regalona.r1.1BG0003910 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30078690, pistato.v30221030 |
| Apiaceae | Apium graveolens | 2 | Ag9G02451, Ag9G02551 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G012640 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711425 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.1096.V1.1, AsparagusV1_07.3834.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G21292 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G20140.1, AT5G44700.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000741m.g.v1.0, Thhalv10027256m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g09510.v2.2, Sp7g18570.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g061980.2N, BniB04g012350.2N, BniB05g016420.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0019 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0041 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g02600 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g23060 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3044 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.296 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012892 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37611, Lb2G08321 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3058, BH03.3231, CH03.3428 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0568160, gene-QOZ80_7BG0599550 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0145150.1 |
| Poaceae | Oryza coarctata | 2 | Oco13G007890, Oco14G008400 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g31500.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G283700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304122 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr19G005990, Chr24G007800, Chr28G007130 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G423300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG030670, gene_TRIDC2BG034330 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G230100.1, TraesCS2B02G251700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb105400_P001, Zm00001eb321900_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6472 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.799, evm.TU.LG23.208 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g08020 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1047 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13449 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5337 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9270 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.295 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004138 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18211 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7663 |
| Salicaceae | Populus euphratica | 2 | populus_peu03839, populus_peu34677 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603102 |
| Solanaceae | Solanum chilense | 1 | SOLCI005847100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018927 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6271 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0297 |
| Zosteraceae | Zostera marina | 1 | Zosma03g25060.v3.1 |