Basic Information
Locus ID:
gene_6111
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 7859778 | 7889515 | + | gene_6111 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 186,898.58 Da | 46.45 | 88.67 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1427 | 1572 | 5.3621E-32 | - |
| CDD | cd18070 | DEXQc_SHPRH | 279 | 684 | 6.60197E-88 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 282 | 776 | 8.3E-87 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1430 | 1561 | 2.1E-5 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 686 | 1616 | 4.06E-31 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1335 | 1396 | 3.21E-9 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 400 | 479 | 1.22E-8 | IPR011011 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 260 | 681 | 1.38E-37 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 390 | 475 | 3.0E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 476 | 705 | 3.8E-31 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 1405 | 1627 | 1.5E-36 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1324 | 1404 | 2.0E-7 | IPR013083 |
| SMART | SM00249 | PHD_3 | 1338 | 1391 | 13.0 | IPR001965 |
| SMART | SM00249 | PHD_3 | 403 | 478 | 5.6E-8 | IPR001965 |
| SMART | SM00487 | ultradead3 | 275 | 653 | 4.0E-18 | IPR014001 |
| SMART | SM00184 | ring_2 | 1339 | 1390 | 6.0E-5 | IPR001841 |
| SMART | SM00490 | helicmild6 | 1461 | 1561 | 4.0E-4 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1433 | 1612 | 8.666552 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 455 | 646 | 10.39591 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1339 | 1391 | 10.615647 | IPR001841 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 404 | 477 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 909 | 944 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 909 | 933 | - | - |
| Coils | Coil | Coil | 1012 | 1032 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40770.1 | zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding. | 0 |
| RefSeq | XP_048494157.1 | E3 ubiquitin-protein ligase SHPRH isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q7TPQ3 | E3 ubiquitin-protein ligase SHPRH OS=Mus musculus OX=10090 GN=Shprh PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QN47 | E3 ubiquitin-protein ligase SHPRH OS=Spinacia oleracea OX=3562 GN=SOVF_166360 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14178 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6111 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032125 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g038790 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30110, Sbi_jg43563 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18338 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004103 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66096, Sgl70410 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012598, gene:ENSEOMG00000020813 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0003090, CQ.Regalona.r1.2BG0004240 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30178190 |
| Apiaceae | Apium graveolens | 2 | Ag3G02346, Ag3G02347 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G012450 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702148 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.680.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G19234 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G40770.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016132m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g23090.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g004630.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1179 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1338 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g12750 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0351s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g06620 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1666 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036405 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14495 |
| Poaceae | Echinochloa crus-galli | 2 | AH03.4070, BH03.4409 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_7BG0613020 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0704900.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_038720, gene-QYE76_038723 |
| Poaceae | Oryza coarctata | 1 | Oco14G016740 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G391500 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0305444, Pt_Chr0305460, Pt_Ctg00377, Pt_Ctg00378 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G002460, Chr0G003600, Chr24G012340 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G227900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG012460, gene_TRIDC2BG015240 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G104700.1, TraesCS2B02G121700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb330720_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-85 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7082 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.458, evm.TU.LG25.863 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g27050 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.874 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-27465 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14527 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1519 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.560 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000767 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14346 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19352 |
| Salicaceae | Populus euphratica | 1 | populus_peu19135 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132611224 |
| Solanaceae | Solanum chilense | 1 | SOLCI004794200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013516 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14150 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3959 |
| Zosteraceae | Zostera marina | 1 | Zosma01g29230.v3.1 |