Basic Information
Locus ID:
gene_6088
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box-like WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 5608469 | 5645535 | + | gene_6088 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 62,364.54 Da | 23.52 | 72.17 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 207 | 518 | 3.1845E-80 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 430 | 476 | 4.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 262 | 301 | 6.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 483 | 518 | 1.3E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 523 | 556 | 0.18 | IPR001680 |
| Pfam | PF08513 | LisH | 8 | 33 | 6.9E-8 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 388 | 425 | 2.1E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 208 | 241 | 1.7E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 307 | 342 | 4.9E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 205 | 561 | 1.28E-81 | IPR036322 |
| Gene3D | G3DSA:1.20.960.30 | - | 2 | 92 | 7.2E-29 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 198 | 562 | 5.2E-149 | IPR015943 |
| SMART | SM00320 | WD40_4 | 521 | 559 | 0.41 | IPR001680 |
| SMART | SM00320 | WD40_4 | 479 | 518 | 1.3E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 203 | 242 | 1.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 386 | 425 | 9.9E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 303 | 342 | 1.1E-8 | IPR001680 |
| SMART | SM00667 | Lish | 5 | 37 | 1.2E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 428 | 476 | 1.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 301 | 5.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 345 | 383 | 0.87 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 210 | 251 | 16.022453 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 310 | 347 | 12.024679 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 5 | 37 | 9.927365 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 269 | 301 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 435 | 478 | 8.57106 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 486 | 523 | 13.685579 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 435 | 478 | 10.174269 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 486 | 527 | 18.1278 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 210 | 243 | 12.472858 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 393 | 427 | 11.787407 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 310 | 351 | 14.819399 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 393 | 434 | 15.220417 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 269 | 301 | 8.966513 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 463 | 477 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 329 | 343 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 329 | 343 | 2.6E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 463 | 477 | 2.6E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 229 | 243 | 2.6E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 187 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67320.1 | WD-40 repeat family protein. Encodes a WD-40 protein involved in histone deacetylation in response to abiotic stress.Identified in a screen for mutations with altered expression of stress induced genes. Functions as a repressor of cold tolerance induced genes. Loss of function mutants are hypersensitive to freezing. | 0 |
| RefSeq | XP_010688269.2 | WD40 repeat-containing protein HOS15 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FN19 | WD40 repeat-containing protein HOS15 OS=Arabidopsis thaliana OX=3702 GN=HOS15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B6YHJ6 | Putative F-box-like/WD repeat-containing protein TBL1XR1 isoform X1 OS=Davidia involucrata OX=16924 GN=Din_000476 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg22739, jg25393 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_23966, gene_6088 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027603 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g015290, BVRB_6g127550 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg13095, Sbi_jg39707, Sbi_jg39709, Sbi_jg52757 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg14621, Seu_jg9089 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00010163, GOSA_00013151, GOSA_00013152 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl12492, Sgl12493, Sgl17769, Sgl17770, Sgl33867, Sgl33869 ... |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000001072, gene:ENSEOMG00000027606 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0025620, CQ.Regalona.r1.6BG0027140 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30205550 |
| Apiaceae | Apium graveolens | 4 | Ag3G00130, Ag4G01126, Ag4G01128, Ag4G01130 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G017260 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103700829, gene-LOC103723685 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.1343.V1.1, AsparagusV1_08.2800.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri17G16281, Ftri9G32452, FtriNA10403 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G67320.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003834m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g29340.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g014530.2N, BniB07g043730.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1793, Ceq05G1376 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1933, Cgl05G1380 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g01770 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0294s00007.v1.0, Dusal.0640s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g14920 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10547 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.950 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037030 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb3G21159, Lb3G21163, Lb8G36071 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.220, BH09.304, CH09.332 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4AG0326450, gene-QOZ80_4BG0358490 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0147120.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_006982 |
| Poaceae | Oryza coarctata | 2 | Oco13G006080, Oco14G006590 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g22220.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G046400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr25G015760, Chr30G015690 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G424700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG031220, gene_TRIDC2BG035760 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G227200.3, TraesCS2B02G255700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb088250_P001, Zm00001eb419800_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-32073 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20920 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.680, evm.TU.LG12.1051 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g25610 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1229 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17323, nbisL1-mrna-739 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13208 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2488 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.498 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001732 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6214 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1931 |
| Salicaceae | Populus euphratica | 1 | populus_peu23333 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132604079, gene-LOC132627811 |
| Solanaceae | Solanum chilense | 4 | SOLCI001606300, SOLCI002711300, SOLCI003508000 ... |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107006567, gene-LOC107006823, gene-LOC107006916 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.6656_chr03_-, gene_3210 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G1814, TC10G2395 |
| Zosteraceae | Zostera marina | 1 | Zosma06g22250.v3.1 |