Basic Information
Locus ID:
gene_6020
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 1796924 | 1799848 | + | gene_6020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 47,477.44 Da | 51.31 | 117.11 | 0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 63 | 105 | 2.96328E-24 | - |
| Pfam | PF04564 | U-box domain | 59 | 129 | 1.6E-15 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 229 | 423 | 9.95E-16 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 53 | 129 | 6.56E-26 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 133 | 430 | 5.7E-20 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 58 | 132 | 1.1E-24 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 62 | 125 | 4.3E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 58 | 132 | 38.99361 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49810.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_021728467.1 | U-box domain-containing protein 30-like [Chenopodium quinoa] | 0 |
| Q058P4 | U-box domain-containing protein 30 OS=Arabidopsis thaliana OX=3702 GN=PUB30 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MYW5 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20871, jg22378 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6020 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036766 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g014790 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg13957, Sbi_jg39643, Sbi_jg54689 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14676 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013207 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12549, Sgl17822 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017884, gene:ENSEOMG00000033611 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0020860, CQ.Regalona.r1.1BG0007280 |
| Apiaceae | Apium graveolens | 3 | Ag3G00109, Ag4G02861, Ag5G00424 |
| Arecaceae | Cocos nucifera | 3 | COCNU_05G000470, scaffold006950G000010 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698683, gene-LOC103707510 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2309.V1.1, AsparagusV1_03.795.V1.1 |
| Asteraceae | Flaveria trinervia | 5 | Ftri17G12756, Ftri18G00067, Ftri1G19144, Ftri1G31986 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G49810.1, AT5G65920.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010374m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g12280.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g047780.2N, BniB07g043470.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1268, Ceq05G1454 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1375, Cgl05G1455 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g00610 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g30910 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-10084, nbisL1-mrna-10113, nbisL1-mrna-6671 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2585, evm.TU.LG06.316 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00012961, Pov_00038609 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4453, CH01.5063, Contig192.93 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0239650, gene-QOZ80_3BG0288370 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0394810.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_069610, gene-QYE76_069639 |
| Poaceae | Oryza coarctata | 2 | Oco05G007320, Oco06G007570 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g13010.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G430900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0101869 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G028410, Chr07G000990, Chr12G011040 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G408400 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG063990, gene_TRIDC4AG009160 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G060800.1.cds1, TraesCS4B02G236200.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb009460_P001, Zm00001eb399480_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2405, nbis-gene-4004 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1730, Zma_g4108 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.622, evm.TU.LG12.1105 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g27840 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.1188, evm.TU.Scaffold_6_RagTag.1773 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-17384, nbisL1-mrna-781, nbisL1-mrna-9345 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-14460, nbisL1-mrna-17826, nbisL1-mrna-20168 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11991, nbisL1-mrna-20612, nbisL1-mrna-2442 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000011l.438, add.evm.TU.utg000018l.98 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001895, Maker00002855 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-19241, nbisL1-mrna-21279, nbisL1-mrna-22970 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-17108, nbisL1-mrna-1886, nbisL1-mrna-3312 |
| Salicaceae | Populus euphratica | 3 | populus_peu13102, populus_peu32076, populus_peu32077 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627754 |
| Solanaceae | Solanum chilense | 1 | SOLCI001416200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018243 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31108_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2692, TC10G2369 |
| Zosteraceae | Zostera marina | 1 | Zosma06g01790.v3.1 |