Basic Information
Locus ID:
gene_5988
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
E3 ubiquitin- protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 122870681 | 122876735 | - | gene_5988 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.38 | 47,568.67 Da | 59.02 | 73.33 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 22 | 62 | 2.1E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 18 | 87 | 1.32E-10 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 303 | 402 | 1.6E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 115 | 1.7E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 22 | 62 | 7.4E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 22 | 63 | 11.500827 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 38 | 47 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 210 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 308 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30580.1 | DREB2A-interacting protein 2. Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. DRIP2 seems to be involved in regulating stress-related transcriptional changes and drought tolerance. | 0 |
| RefSeq | XP_010674852.1 | E3 ubiquitin protein ligase DRIP2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q94AY3 | E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana OX=3702 GN=DRIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9EGJ0 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg16168, jg35380, jg37837, jg8729 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10078 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah006100 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g082200, BVRB_8g198440 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg16817, Sbi_jg61340 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg102 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008213 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24833, Sgl29979 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000008677, gene:ENSEOMG00000009047 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0010500, CQ.Regalona.r1.4BG0010680 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30026210, pistato.v30184230, pistato.v30235650 |
| Apiaceae | Apium graveolens | 2 | Ag10G00698, Ag6G02078 |
| Arecaceae | Cocos nucifera | 3 | COCNU_06G015090, COCNU_08G000170, COCNU_14G011850 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103704537, gene-LOC103705977 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.3206.V1.1, AsparagusV1_07.3494.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G18643, Ftri15G07812 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G06770.1, AT2G30580.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007754m.g.v1.0, Thhalv10016711m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g05500.v2.2, Sp4g13130.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g013550.2N, BniB06g019630.2N, BniB08g019050.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq06G1365, Ceq06G2390, Ceq07G0384 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl06G1427, Cgl06G2514, Cgl07G0397 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g01350, gene.Cymno06g12750 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g41090 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-2692, nbisL1-mrna-9739 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.2250, evm.TU.LG03.2251 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007908, Pov_00024666 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06949 |
| Poaceae | Echinochloa crus-galli | 9 | AH01.1206, AH05.3962, BH01.793, BH05.4055, CH01.1443 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_3AG0216740, gene-QOZ80_3AG0225140 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.5HG0433570.1, HORVU.MOREX.r3.5HG0509170.1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_000709, gene-QYE76_061958, gene-QYE76_062030 ... |
| Poaceae | Oryza coarctata | 6 | Oco05G018520, Oco05G023190, Oco06G019280, Oco06G024080 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os03g43360.2, LOC_Os03g53080.1, LOC_Os12g40790.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G086000, gene-BS78_01G149100 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0104440, Pt_Chr0107099, Pt_Chr0402676, Pt_Chr0704270 |
| Poaceae | Sporobolus alterniflorus | 11 | Chr01G005620, Chr01G009820, Chr04G018540, Chr04G024580 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G126500, Tel5E01G602600, Tel5E01G607200 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC5AG009030, gene_TRIDC5AG055360 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS5A02G058000.1, TraesCS5A02G378600.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb031130_P001, Zm00001eb051090_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15024, nbis-gene-44598 |
| Poaceae | Zoysia macrostachya | 6 | Zma_g25287, Zma_g2825, Zma_g3231, Zma_g4823, Zma_g508 ... |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1243, evm.TU.LG20.1257 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g02880 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_2_RagTag.1940, evm.TU.Scaffold_3_RagTag.1235 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-1557, nbisL1-mrna-21240, nbisL1-mrna-3357 ... |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-1138, nbisL1-mrna-11786, nbisL1-mrna-13207 ... |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-13780, nbisL1-mrna-18347, nbisL1-mrna-2495 ... |
| Rhizophoraceae | Kandelia candel | 4 | evm.TU.utg000003l.488, evm.TU.utg000009l.125 ... |
| Rhizophoraceae | Kandelia obovata | 4 | Maker00001590, Maker00005516, Maker00009142, Maker00011220 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-12913, nbisL1-mrna-1471, nbisL1-mrna-19257 ... |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-16250, nbisL1-mrna-1937, nbisL1-mrna-258 ... |
| Salicaceae | Populus euphratica | 7 | populus_peu07471, populus_peu13588, populus_peu13589 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607935, gene-LOC132610677 |
| Solanaceae | Solanum chilense | 3 | SOLCI001138100, SOLCI002795600, SOLCI004328200 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107021589, gene-LOC107022044, gene-LOC107029630 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_5782, gene_5988 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2792 |
| Zosteraceae | Zostera marina | 2 | Zosma05g22660.v3.1, Zosma06g23960.v3.1 |