Basic Information
Locus ID:
gene_5986
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 30350419 | 30378806 | - | gene_5986 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.98 | 157,530.13 Da | 39.54 | 86.62 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12195 | CIPK_C | 1257 | 1367 | 1.99136E-33 | - |
| CDD | cd17920 | DEXHc_RecQ | 2 | 196 | 6.58036E-90 | - |
| Pfam | PF03822 | NAF domain | 1254 | 1305 | 8.5E-17 | IPR004041 |
| Pfam | PF00069 | Protein kinase domain | 934 | 1190 | 1.1E-74 | IPR000719 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 217 | 322 | 9.8E-21 | IPR001650 |
| Pfam | PF09382 | RQC domain | 401 | 497 | 9.9E-21 | IPR018982 |
| Pfam | PF00570 | HRDC domain | 550 | 612 | 3.7E-11 | IPR002121 |
| Pfam | PF14493 | Helix-turn-helix domain | 653 | 749 | 7.7E-15 | IPR029491 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 16 | 175 | 1.5E-19 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 336 | 397 | 1.2E-11 | IPR032284 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 934 | 1191 | 2.16E-88 | IPR011009 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 53 | 337 | 3.04E-55 | IPR027417 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 395 | 498 | 8.57E-22 | IPR036390 |
| SUPERFAMILY | SSF47819 | HRDC-like | 541 | 621 | 2.83E-15 | IPR010997 |
| Gene3D | G3DSA:3.40.50.300 | - | 197 | 398 | 2.5E-55 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 540 | 622 | 1.0E-13 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 399 | 520 | 1.4E-31 | IPR036388 |
| Gene3D | G3DSA:3.30.310.80 | Kinase associated domain 1, KA1 | 1252 | 1373 | 5.7E-29 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 924 | 1232 | 5.5E-102 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 195 | 2.9E-72 | IPR027417 |
| SMART | SM00220 | serkin_6 | 932 | 1190 | 3.0E-102 | IPR000719 |
| SMART | SM00490 | helicmild6 | 242 | 323 | 8.4E-27 | IPR001650 |
| SMART | SM00487 | ultradead3 | 10 | 207 | 3.2E-29 | IPR014001 |
| SMART | SM00956 | RQC_2 | 404 | 506 | 1.1E-19 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 4 | 454 | 7.9E-147 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 22 | 189 | 23.511427 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 542 | 622 | 17.221472 | IPR002121 |
| ProSiteProfiles | PS50816 | NAF domain profile. | 1251 | 1275 | 12.601376 | IPR018451 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 932 | 1190 | 52.668243 | IPR000719 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 213 | 368 | 19.352345 | IPR001650 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 938 | 961 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1053 | 1065 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1376 | 1412 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30360.1 | SOS3-interacting protein 4. Encodes a SOS2-like protein kinase that is a member of the CBL-interacting protein kinase family.Loss of function mutants show a decrease in sensitivity to high pH.Phosphorylates AHA2, a plasma membrane H+ ATPase.This phosphorylation appears to regulate the activity of the proton transporter. | 0 |
| RefSeq | XP_021769787.1 | uncharacterized protein LOC110734037 isoform X1 [Chenopodium quinoa] | 0 |
| O22932 | CBL-interacting serine/threonine-protein kinase 11 OS=Arabidopsis thaliana OX=3702 GN=CIPK11 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9S2K9 | ATP-dependent DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_000900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology