halophFGD

Basic Information

Locus ID: gene_5900

Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544

Genome Assembly: Koichi Toyokura Assembly

Description: Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Super-Scaffold_15_Chr_7S	29241494	29252431	-	gene_5900

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.94	78,208.26 Da	30.94	80.51	-0.25

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00722	Glycosyl hydrolases family 16	418	600	6.9E-51	IPR000757
Pfam	PF06955	Xyloglucan endo-transglycosylase (XET) C-terminus	630	674	8.8E-11	IPR010713
SUPERFAMILY	SSF81383	F-box domain	49	99	2.88E-7	IPR036047
SUPERFAMILY	SSF49899	Concanavalin A-like lectins/glucanases	414	675	3.04E-58	IPR013320
Gene3D	G3DSA:1.20.1280.50	-	45	107	3.0E-5	-
Gene3D	G3DSA:2.60.120.200	-	404	674	4.3E-83	-
ProSiteProfiles	PS51762	Glycosyl hydrolases family 16 (GH16) domain profile.	336	609	26.78866	IPR000757

Gene Ontology

Biological Process:

GO:0005975 (carbohydrate metabolic process) GO:0044042 (glucan metabolic process)

Molecular Function:

GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds) GO:0005515 (protein binding) GO:0016762 (xyloglucan:xyloglucosyl transferase activity)

Cellular Component:

GO:0005618 (cell wall) GO:0048046 (apoplast)

KEGG Pathway

KO Term:

K08235 (xyloglucan:xyloglucosyl transferase [EC:2.4.1.207])

Best hit

Source	Best Hit ID	Description
TAIR	AT1G14720.1	xyloglucan endotransglucosylase/hydrolase 28. member of Glycoside Hydrolase Family 16
RefSeq	XP_021721063.1	probable xyloglucan endotransglucosylase/hydrolase protein 28 [Chenopodium quinoa]
Swiss-Prot	Q38909	Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana OX=3702 GN=XTH28 PE=2 SV=1
TrEMBL	A0A803KRZ6	Xyloglucan endotransglucosylase/hydrolase OS=Chenopodium quinoa OX=63459 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	15	gene_17537, gene_17538, gene_18174, gene_18175, gene_18176 ... gene_18177, gene_18178, gene_3638, gene_3639, gene_3640, gene_3641, gene_3642, gene_5900, gene_5903, gene_5906
Amaranthaceae	Atriplex hortensis	2	Ah014614, Ah014657
Amaranthaceae	Beta vulgaris	1	BVRB_1g002990
Amaranthaceae	Salicornia bigelovii	1	Sbi_jg28880
Amaranthaceae	Salicornia europaea	2	Seu_jg6462, Seu_jg6840
Amaranthaceae	Suaeda glauca	3	Sgl02564, Sgl07719, Sgl29549
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000004485, gene:ENSEOMG00000007793 ... gene:ENSEOMG00000015554, gene:ENSEOMG00000017390, gene:ENSEOMG00000027752
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.2AG0005320, CQ.Regalona.r1.8BG0004300 ... CQ.Regalona.r1.8BG0004320, CQ.Regalona.r1.9AG0000410, CQ.Regalona.r1.9AG0005610
Anacardiaceae	Pistacia vera	1	pistato.v30285400
Rhizophoraceae	Kandelia candel	1	add.evm.TU.utg000016l.284
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-18723
Solanaceae	Lycium barbarum	1	gene-LOC132611587