Basic Information
Locus ID:
gene_5891
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 29084479 | 29087612 | - | gene_5891 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 32,733.81 Da | 56.55 | 90.24 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 223 | 271 | 6.7E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 223 | 277 | 1.33E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 195 | 276 | 1.3E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 224 | 270 | 1.9E-5 | IPR001841 |
| SMART | SM00184 | ring_2 | 120 | 156 | 17.0 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 224 | 271 | 11.338544 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048501509.1 | RING-H2 finger protein ATL47-like [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A803L789 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5891 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG19.914 |