halophFGD

Basic Information

Locus ID: gene_5887

Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544

Genome Assembly: Koichi Toyokura Assembly

Description: triosephosphate isomerase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Super-Scaffold_15_Chr_7S	29048652	29053365	-	gene_5887

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.53	27,359.95 Da	21.51	99.80	0.09

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00311	TIM	5	246	3.55481E-129	IPR000652
Pfam	PF00121	Triosephosphate isomerase	6	245	2.0E-90	IPR000652
SUPERFAMILY	SSF51351	Triosephosphate isomerase (TIM)	2	247	3.67E-95	IPR035990
Gene3D	G3DSA:3.20.20.70	Aldolase class I	1	253	2.4E-117	IPR013785
TIGRFAM	TIGR00419	tim: triose-phosphate isomerase	6	240	3.1E-93	IPR000652
ProSiteProfiles	PS51440	Triosephosphate isomerase (TIM) family profile.	4	247	82.532677	IPR000652
ProSitePatterns	PS00171	Triosephosphate isomerase active site.	164	174	-	IPR020861
Hamap	MF_00147_B	Triosephosphate isomerase [tpiA].	3	247	58.573875	IPR022896

Gene Ontology

Biological Process:

GO:0006096 (glycolytic process)

Molecular Function:

GO:0003824 (catalytic activity) GO:0004807 (triose-phosphate isomerase activity)

KEGG Pathway

KO Term:

K01803 (triosephosphate isomerase (TIM) [EC:5.3.1.1])

Pathway:

ko00010 (Glycolysis / Gluconeogenesis) map00010 (Glycolysis / Gluconeogenesis) ko00051 (Fructose and mannose metabolism) map00051 (Fructose and mannose metabolism) ko00562 (Inositol phosphate metabolism) map00562 (Inositol phosphate metabolism) ko00710 (Carbon fixation by Calvin cycle) map00710 (Carbon fixation by Calvin cycle) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01200 (Carbon metabolism) map01200 (Carbon metabolism) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids)

Module:

M00001 (Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate) M00002 (Glycolysis, core module involving three-carbon compounds) M00003 (Gluconeogenesis, oxaloacetate => fructose-6P)

Reaction:

R01015 (D-Glyceraldehyde 3-phosphate <=> Glycerone phosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G55440.1	triosephosphate isomerase. Encodes triosephosphate isomerase.
RefSeq	XP_010685754.1	triosephosphate isomerase, cytosolic [Beta vulgaris subsp. vulgaris]
Swiss-Prot	P21820	Triosephosphate isomerase, cytosolic OS=Coptis japonica OX=3442 PE=2 SV=1
TrEMBL	A0A6A1WL16	Triosephosphate isomerase, cytosolic OS=Morella rubra OX=262757 GN=CJ030_MR1G018343 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg14328, jg30336
Aizoaceae	Mesembryanthemum crystallinum	3	gene_16565, gene_21873, gene_5887
Amaranthaceae	Atriplex hortensis	3	Ah009729, Ah028026, Ah035393
Amaranthaceae	Beta vulgaris	3	BVRB_2g024780, BVRB_7g173820, BVRB_9g214650
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg12142, Sbi_jg1756, Sbi_jg21196, Sbi_jg22607 ... Sbi_jg34777, Sbi_jg47081
Amaranthaceae	Salicornia europaea	3	Seu_jg16499, Seu_jg21365, Seu_jg2995
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00003202, GOSA_00016309, GOSA_00020375
Amaranthaceae	Suaeda glauca	8	Sgl55393, Sgl61514, Sgl62583, Sgl62584, Sgl67130, Sgl67131 ... Sgl73032, Sgl76571
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000008065, gene:ENSEOMG00000015257 ... gene:ENSEOMG00000017657, gene:ENSEOMG00000017727, gene:ENSEOMG00000037647, gene:ENSEOMG00000039704, gene:ENSEOMG00000042274, gene:ENSEOMG00000050891, gene:ENSEOMG00000051222
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1BG0018340, CQ.Regalona.r1.2AG0020160 ... CQ.Regalona.r1.7AG0002880, CQ.Regalona.r1.7BG0003400, CQ.Regalona.r1.9AG0021180, CQ.Regalona.r1.9BG0002810
Anacardiaceae	Pistacia vera	4	pistato.v30060310, pistato.v30112630, pistato.v30175580 ... pistato.v30260440
Apiaceae	Apium graveolens	2	Ag10G01159, Ag7G01176
Arecaceae	Cocos nucifera	4	COCNU_04G016000, COCNU_08G008510, COCNU_09G003860 ... COCNU_16G007990
Arecaceae	Phoenix dactylifera	5	gene-LOC103703497, gene-LOC103706349, gene-LOC103714060 ... gene-LOC103716485, gene-LOC103721989
Asparagaceae	Asparagus officinalis	3	AsparagusV1_05.340.V1.1, AsparagusV1_07.186.V1.1 ... AsparagusV1_08.3523.V1.1
Asteraceae	Flaveria trinervia	3	Ftri17G30823, Ftri5G14170, Ftri9G31588
Brassicaceae	Arabidopsis thaliana	2	AT2G21170.1, AT3G55440.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10000249m.g.v1.0, Thhalv10010654m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g00320.v2.2, Sp5g07030.v2.2
Brassicaceae	Brassica nigra	5	BniB01g023000.2N, BniB02g016830.2N, BniB06g056790.2N ... BniB06g064890.2N, BniB08g069850.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G1119, Ceq07G1654, Ceq08G2169
Casuarinaceae	Casuarina glauca	4	Cgl02G1161, Cgl07G1789, Cgl07G1790, Cgl08G2323
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g09790, gene.Cymno18g00270
Dunaliellaceae	Dunaliella salina	1	Dusal.0384s00014.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g07840, gene.Thate07g13920, gene.Thate08g12900
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-3996
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG02.1736, evm.TU.LG08.262, evm.TU.LG09.1264
Plantaginaceae	Plantago ovata	2	Pov_00001507, Pov_00040117
Plumbaginaceae	Limonium bicolor	5	Lb3G16295, Lb3G16298, Lb7G33336, Lb7G33341, Lb8G35714
Poaceae	Echinochloa crus-galli	9	AH02.3836, AH02.672, AH03.2735, BH02.3849, BH02.675 ... BH03.2879, BH07.4158, CH02.774, CH03.3084
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0009680, gene-QOZ80_1AG0039470 ... gene-QOZ80_1BG0058280, gene-QOZ80_1BG0089500, gene-QOZ80_6AG0528200, gene-QOZ80_6BG0482200
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.3HG0230590.1, HORVU.MOREX.r3.5HG0499580.1
Poaceae	Lolium multiflorum	5	gene-QYE76_018031, gene-QYE76_037520, gene-QYE76_048572 ... gene-QYE76_056277, gene-QYE76_062318
Poaceae	Oryza coarctata	5	Oco01G001900, Oco01G024610, Oco02G001890, Oco02G025500 ... Oco18G010390
Poaceae	Oryza sativa	3	LOC_Os01g05490.1, LOC_Os01g62420.1, LOC_Os09g36450.1
Poaceae	Paspalum vaginatum	3	gene-BS78_02G255100, gene-BS78_03G065300 ... gene-BS78_03G331800
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0205837, Pt_Chr0700034
Poaceae	Sporobolus alterniflorus	11	Chr02G004970, Chr02G023510, Chr03G004300, Chr03G019890 ... Chr05G014390, Chr08G000840, Chr08G022270, Chr10G014150, Chr11G008120, Chr14G010190, Chr21G010340
Poaceae	Thinopyrum elongatum	3	Tel3E01G133200, Tel3E01G575900, Tel5E01G515200
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG008640, gene_TRIDC3AG051670 ... gene_TRIDC3BG011880, gene_TRIDC3BG058380, gene_TRIDC5AG047950, gene_TRIDC5BG051750
Poaceae	Triticum aestivum	8	TraesCS3A02G073300.1, TraesCS3A02G359400.1 ... TraesCS3B02G087400.1, TraesCS3B02G392000.1, TraesCS3D02G073000.1, TraesCS5A02G324200.1, TraesCS5B02G324800.1, TraesCS5D02G331100.1
Poaceae	Zea mays	5	Zm00001eb103580_P001, Zm00001eb124410_P001 ... Zm00001eb319770_P001, Zm00001eb335870_P001, Zm00001eb367890_P001
Poaceae	Zoysia japonica	7	nbis-gene-11451, nbis-gene-13020, nbis-gene-13249 ... nbis-gene-35258, nbis-gene-49551, nbis-gene-49552, nbis-gene-6953
Poaceae	Zoysia macrostachya	4	Zma_g30000, Zma_g32199, Zma_g7601, Zma_g9966
Portulacaceae	Portulaca oleracea	6	evm.TU.LG05.884, evm.TU.LG08.1190, evm.TU.LG19.865 ... evm.TU.LG22.946, evm.TU.LG24.862, evm.TU.LG25.448
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g12890, gene.Posoc07g15270
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_12_RagTag.248, evm.TU.Scaffold_2_RagTag.126
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-14030, nbisL1-mrna-24554, nbisL1-mrna-5085 ... nbisL1-mrna-6008
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10421, nbisL1-mrna-11027, nbisL1-mrna-16903 ... nbisL1-mrna-19651
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-16216, nbisL1-mrna-19527, nbisL1-mrna-3358 ... nbisL1-mrna-9383
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000009l.1159, evm.TU.utg000016l.160 ... evm.TU.utg000027l.421
Rhizophoraceae	Kandelia obovata	3	Maker00005525, Maker00016822, Maker00018038
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-14148, nbisL1-mrna-5566
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-11753, nbisL1-mrna-14105, nbisL1-mrna-21122
Salicaceae	Populus euphratica	6	populus_peu02123, populus_peu06437, populus_peu08761 ... populus_peu20279, populus_peu35671, populus_peu36595
Solanaceae	Lycium barbarum	4	gene-LOC132599285, gene-LOC132605872, gene-LOC132606616 ... gene-LOC132614384
Solanaceae	Solanum chilense	4	SOLCI003901100, SOLCI004472500, SOLCI005290200 ... SOLCI007478500
Solanaceae	Solanum pennellii	4	gene-LOC107002393, gene-LOC107007743, gene-LOC107017928 ... gene-LOC107021278
Tamaricaceae	Reaumuria soongarica	3	gene_11393, gene_11790, gene_8368
Tamaricaceae	Tamarix chinensis	4	TC05G1764, TC08G0768, TC11G2132, TC12G0709
Zosteraceae	Zostera marina	4	Zosma02g18770.v3.1, Zosma03g20670.v3.1, Zosma06g14860.v3.1 ... Zosma06g29310.v3.1