Basic Information
Locus ID:
gene_588
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 1212401 | 1256723 | + | gene_588 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 48,585.09 Da | 47.13 | 72.66 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 294 | 399 | 5.3E-31 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 90 | 432 | 3.28E-100 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 84 | 430 | 6.7E-90 | IPR012334 |
| SMART | SM00710 | pbh1 | 293 | 314 | 4.5 | IPR006626 |
| SMART | SM00710 | pbh1 | 322 | 343 | 430.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 232 | 281 | 730.0 | IPR006626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 84 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_010672584.1 | polygalacturonase At1g48100 [Beta vulgaris subsp. vulgaris] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8CPJ4 | Polygalacturonase At1g80170 OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_3g059660 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology