Basic Information
Locus ID:
gene_5875
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Ubiquitin fusion degradation protein 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 28884174 | 28888814 | - | gene_5875 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 35,977.43 Da | 45.48 | 65.14 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 14 | 185 | 6.5E-80 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 110 | 183 | 1.1E-34 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 6 | 109 | 7.0E-45 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 325 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 215 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G29070.2 | Ubiquitin fusion degradation UFD1 family protein. | 0 |
| RefSeq | XP_010685726.1 | ubiquitin recognition factor in ER-associated degradation protein 1 [Beta vulgaris subsp. vulgaris] | 0 |
| P70362 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus musculus OX=10090 GN=Ufd1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9EQN3 | Ubiquitin fusion degradation protein 1 homolog OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology