Basic Information
Locus ID:
gene_5796
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 27837394 | 27845698 | - | gene_5796 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 67,195.04 Da | 44.01 | 81.95 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 35 | 69 | 1.6E-8 | IPR001810 |
| Pfam | PF00445 | Ribonuclease T2 family | 499 | 575 | 6.8E-12 | IPR001568 |
| Pfam | PF07734 | F-box associated | 307 | 431 | 1.7E-6 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 32 | 79 | 1.07E-12 | IPR036047 |
| SUPERFAMILY | SSF55895 | Ribonuclease Rh-like | 496 | 576 | 9.94E-17 | IPR036430 |
| Gene3D | G3DSA:1.20.1280.50 | - | 26 | 83 | 3.0E-8 | - |
| Gene3D | G3DSA:3.90.730.10 | - | 493 | 578 | 1.8E-15 | IPR036430 |
| SMART | SM00256 | fbox_2 | 33 | 73 | 1.6E-8 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 27 | 73 | 9.312009 | IPR001810 |
| ProSitePatterns | PS00530 | Ribonuclease T2 family histidine active site 1. | 530 | 537 | - | IPR018188 |
| Coils | Coil | Coil | 6 | 33 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_003594083.2 | F-box/kelch-repeat protein At3g23880 [Medicago truncatula] | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9AYU5 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 15 | gene_12873, gene_12874, gene_18285, gene_18342, gene_18344 ... |