Basic Information
Locus ID:
gene_5775
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Acyl-CoA N-acyltransferase with RING FYVE PHD-type zinc finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 27605147 | 27613709 | - | gene_5775 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 144,797.55 Da | 46.30 | 71.76 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15532 | PHD2_CHD_II | 828 | 867 | 9.44962E-16 | - |
| CDD | cd04301 | NAT_SF | 1024 | 1084 | 1.42924E-4 | - |
| Pfam | PF16135 | Tify domain binding domain | 748 | 799 | 3.4E-20 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 827 | 868 | 1.0E-7 | IPR019787 |
| Pfam | PF05641 | Agenet domain | 23 | 98 | 3.7E-16 | IPR008395 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1016 | 1114 | 1.64E-8 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 813 | 868 | 1.05E-13 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 817 | 868 | 6.1E-16 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 1000 | 1129 | 4.0E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 869 | 929 | 8.2E-7 | IPR013083 |
| SMART | SM00743 | agenet_At_2 | 105 | 162 | 0.1 | IPR014002 |
| SMART | SM00249 | PHD_3 | 827 | 868 | 2.7E-10 | IPR001965 |
| SMART | SM00743 | agenet_At_2 | 18 | 101 | 0.27 | IPR014002 |
| SMART | SM00249 | PHD_3 | 869 | 927 | 0.84 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 825 | 870 | 9.837099 | IPR019787 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 966 | 1134 | 10.575954 | IPR000182 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 866 | 929 | 8.778 | IPR019787 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1214 | 1228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 589 | 647 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1179 | 1239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 590 | 606 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 448 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 503 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58610.2 | - | 0 |
| RefSeq | XP_010685527.2 | uncharacterized protein LOC104899934 [Beta vulgaris subsp. vulgaris] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KRG7 | PHD-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology