Basic Information
Locus ID:
gene_5734
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 27113554 | 27116606 | - | gene_5734 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.94 | 65,812.53 Da | 37.58 | 84.17 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 374 | 483 | 1.5E-5 | IPR013187 |
| Pfam | PF00646 | F-box domain | 168 | 208 | 5.6E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 166 | 242 | 2.49E-11 | IPR036047 |
| SMART | SM00256 | fbox_2 | 172 | 212 | 8.6E-4 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 275 | 494 | 6.3E-27 | IPR017451 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 560 | - | - |
| Coils | Coil | Coil | 538 | 561 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021721030.1 | F-box/kelch-repeat protein At3g23880-like [Chenopodium quinoa] | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R765 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_104000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_19844, gene_19846, gene_19848, gene_5734 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003462 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl72718, Sgl76257, Sgl76258 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000038235 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.1114, evm.TU.LG24.1115 |