Basic Information
Locus ID:
gene_5728
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 26998464 | 27000927 | - | gene_5728 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 46,425.34 Da | 44.65 | 105.92 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 53 | 7.29882E-23 | - |
| Pfam | PF04564 | U-box domain | 6 | 87 | 6.7E-15 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 112 | 394 | 2.27E-17 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 90 | 1.91E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 97 | 3.6E-25 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 101 | 408 | 1.4E-17 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 9 | 86 | 1.3E-25 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 93 | 30.11253 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_021857852.1 | E3 ubiquitin-protein ligase PUB23-like [Spinacia oleracea] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LXM4 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology