Basic Information
Locus ID:
gene_5649
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 103172488 | 103193326 | - | gene_5649 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 95,372.31 Da | 43.09 | 76.49 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 509 | 561 | 6.5E-8 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 272 | 327 | 4.4E-11 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 443 | 492 | 1.8E-12 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 748 | 833 | 5.12E-7 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 589 | 646 | 8.02E-7 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 505 | 563 | 3.7E-10 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 589 | 652 | 1.4E-9 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 502 | 568 | 1.2E-12 | IPR013083 |
| SMART | SM00249 | PHD_3 | 509 | 560 | 4.1E-8 | IPR001965 |
| SMART | SM00249 | PHD_3 | 593 | 650 | 0.73 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 507 | 562 | 10.0151 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 510 | 559 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| Coils | Coil | Coil | 11 | 31 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_034693825.1 | uncharacterized protein LOC117920421 isoform X2 [Vitis riparia] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9B102 | PHD-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology