Basic Information
Locus ID:
gene_5625
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Disease resistance protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 25401257 | 25411836 | - | gene_5625 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 217,483.83 Da | 53.63 | 94.20 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06410 | PB1_UP2 | 1800 | 1907 | 9.45615E-30 | - |
| Pfam | PF00564 | PB1 domain | 1818 | 1908 | 7.5E-15 | IPR000270 |
| Pfam | PF00931 | NB-ARC domain | 172 | 407 | 1.0E-35 | IPR002182 |
| SUPERFAMILY | SSF52047 | RNI-like | 1319 | 1709 | 3.22E-13 | - |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 1817 | 1912 | 1.86E-16 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 577 | 900 | 4.08E-20 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 972 | 1292 | 6.67E-18 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 163 | 437 | 3.89E-38 | IPR027417 |
| Gene3D | G3DSA:1.10.8.430 | - | 336 | 421 | 1.1E-9 | IPR042197 |
| Gene3D | G3DSA:3.40.50.300 | - | 150 | 334 | 4.3E-26 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1526 | 1724 | 7.2E-8 | IPR032675 |
| Gene3D | G3DSA:3.10.20.90 | - | 1818 | 1907 | 8.5E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 545 | 919 | 7.3E-25 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1163 | 1474 | 2.5E-16 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 923 | 1162 | 1.3E-11 | IPR032675 |
| SMART | SM00382 | AAA_5 | 186 | 356 | 0.0037 | IPR003593 |
| SMART | SM00666 | PB1_new | 1796 | 1907 | 1.4E-21 | IPR000270 |
| PRINTS | PR00364 | Disease resistance protein signature | 372 | 386 | 7.8E-16 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 189 | 204 | 7.8E-16 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 609 | 625 | 7.8E-16 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 275 | 289 | 7.8E-16 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1748 | 1777 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1743 | 1792 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1778 | 1792 | - | - |
| Coils | Coil | Coil | 31 | 58 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12280.1 | LRR and NB-ARC domains-containing disease resistance protein. | 0 |
| RefSeq | XP_021716646.1 | probable disease resistance protein At4g27220 [Chenopodium quinoa] | 0 |
| Q9T048 | Disease resistance protein At4g27190 OS=Arabidopsis thaliana OX=3702 GN=At4g27190 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6P5WV07 | uncharacterized protein LOC111277501 OS=Durio zibethinus OX=66656 GN=LOC111277501 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology