Basic Information
Locus ID:
gene_5622
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 101909954 | 101922504 | - | gene_5622 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 181,335.13 Da | 49.98 | 92.93 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1230 | 1620 | 3.4669E-116 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1277 | 1622 | 5.9E-79 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 3 | 524 | 6.91E-35 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1225 | 1615 | 4.71E-91 | IPR035983 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1505 | 1620 | 2.8E-33 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 124 | 550 | 1.7E-45 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1173 | 1399 | 1.2E-38 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1467 | 1499 | 1.2E-8 | - |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 1445 | 1466 | 1.2E-8 | - |
| SMART | SM00185 | arm_5 | 671 | 713 | 36.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 231 | 271 | 0.079 | IPR000225 |
| SMART | SM00119 | hect_3 | 1239 | 1622 | 1.3E-87 | IPR000569 |
| SMART | SM00185 | arm_5 | 149 | 189 | 240.0 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1269 | 1622 | 58.45895 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 73 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 84 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_030924360.1 | E3 ubiquitin-protein ligase UPL4 [Quercus lobata] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5B6YRT3 | HECT-type E3 ubiquitin transferase OS=Davidia involucrata OX=16924 GN=Din_003786 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology