Basic Information
Locus ID:
gene_5582
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 24562414 | 24569854 | - | gene_5582 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.69 | 46,454.73 Da | 52.08 | 65.34 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 56 | 126 | 9.2461E-36 | - |
| CDD | cd12619 | RRM2_PUB1 | 141 | 215 | 1.0045E-51 | - |
| CDD | cd12354 | RRM3_TIA1_like | 261 | 336 | 6.14482E-32 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 56 | 122 | 6.9E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 142 | 212 | 1.8E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 263 | 320 | 1.5E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 38 | 132 | 2.15E-23 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 253 | 344 | 5.02E-20 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 134 | 224 | 4.43E-27 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 137 | 240 | 1.7E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 136 | 1.6E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 241 | 340 | 3.1E-21 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 141 | 214 | 1.2E-23 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 262 | 332 | 2.5E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 55 | 124 | 3.7E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 261 | 336 | 14.50465 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 140 | 218 | 16.909462 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 54 | 128 | 14.965146 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 259 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_010685278.1 | oligouridylate-binding protein 1B [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KQY9 | Oligouridylate-binding protein 1-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology