Basic Information
Locus ID:
gene_5570
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
1-phosphatidylinositol-3-phosphate 5-kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 24184314 | 24197038 | - | gene_5570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 202,614.31 Da | 50.91 | 75.67 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17300 | PIPKc_PIKfyve | 1538 | 1801 | 1.14939E-150 | IPR044769 |
| CDD | cd03334 | Fab1_TCP | 384 | 656 | 4.2032E-132 | - |
| Pfam | PF01363 | FYVE zinc finger | 33 | 101 | 1.7E-15 | IPR000306 |
| Pfam | PF00118 | TCP-1/cpn60 chaperonin family | 391 | 652 | 1.4E-32 | IPR002423 |
| Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 1577 | 1743 | 3.7E-34 | IPR002498 |
| SUPERFAMILY | SSF56104 | SAICAR synthase-like | 1534 | 1801 | 3.92E-81 | - |
| SUPERFAMILY | SSF52029 | GroEL apical domain-like | 450 | 622 | 2.09E-41 | IPR027409 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 31 | 103 | 2.45E-17 | IPR011011 |
| Gene3D | G3DSA:3.30.810.10 | - | 1660 | 1802 | 4.6E-42 | - |
| Gene3D | G3DSA:3.30.800.10 | Phosphatidylinositol Phosphate Kinase II Beta | 1496 | 1658 | 6.4E-37 | IPR027484 |
| Gene3D | G3DSA:3.50.7.10 | GroEL | 449 | 622 | 1.5E-53 | IPR027409 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 113 | 3.3E-19 | IPR013083 |
| SMART | SM00064 | fyve_4 | 28 | 103 | 3.1E-16 | IPR000306 |
| SMART | SM00330 | PIPK_2 | 1515 | 1802 | 2.4E-128 | IPR002498 |
| ProSiteProfiles | PS51455 | Phosphatidylinositol phosphate kinase (PIPK) domain profile. | 1482 | 1801 | 59.338051 | IPR002498 |
| ProSiteProfiles | PS50178 | Zinc finger FYVE/FYVE-related type profile. | 36 | 102 | 12.726812 | IPR017455 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1261 | 1280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 313 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 209 | - | - |
| Coils | Coil | Coil | 1111 | 1131 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14270.1 | phosphatidylinositol-4-phosphate 5-kinase family protein. Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization. | 0 |
| RefSeq | XP_010685217.2 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LUM0 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B OS=Arabidopsis thaliana OX=3702 GN=FAB1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9S494 | 1-phosphatidylinositol-3-phosphate 5-kinase OS=Spinacia oleracea OX=3562 GN=SOVF_001970 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology