Basic Information
Locus ID:
gene_5493
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 22893208 | 22907228 | - | gene_5493 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 92,834.65 Da | 52.85 | 69.56 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 692 | 730 | 7.63857E-19 | - |
| Pfam | PF13639 | Ring finger domain | 691 | 731 | 1.9E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 691 | 730 | 2.73E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 660 | 733 | 3.3E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 692 | 732 | 5.3E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 692 | 730 | 10.600894 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 415 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 300 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04790.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021720245.1 | E3 ubiquitin-protein ligase RLIM-like [Chenopodium quinoa] | 0 |
| A5WWA0 | E3 ubiquitin-protein ligase znrf3 OS=Danio rerio OX=7955 GN=znrf3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9CPZ5 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5857 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5493 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah028555, Ah028557 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26746, Sbi_jg33809 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8507 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011738 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73611, Sgl77171 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006492, gene:ENSEOMG00000038040 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0008230, CQ.Regalona.r1.9BG0007890 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30240750 |
| Apiaceae | Apium graveolens | 2 | Ag1G01741, Ag9G01657 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706984, gene-LOC103720151 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.115.V1.1, AsparagusV1_04.298.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | FtriNA18252 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G04790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007101m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g03630.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g046060.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0774 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0827 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g00910 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g07690 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 4 | nbisL1-mrna-12044, nbisL1-mrna-12045, nbisL1-mrna-12046 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.625 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021315 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G07742, Lb2G09045 |
| Poaceae | Echinochloa crus-galli | 8 | AH02.2712, AH08.630, AH09.1531, BH02.2794, BH08.689 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0028280, gene-QOZ80_1BG0078450 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0181290.1, HORVU.MOREX.r3.3HG0279370.1 |
| Poaceae | Oryza coarctata | 4 | Oco01G017020, Oco02G017240, Oco07G010530, Oco08G010280 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g48310.1, LOC_Os04g43220.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G227600, gene-BS78_06G156700 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0302112, Pt_Chr0302135, Pt_Chr0602307, Pt_Chr0605121 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr03G013300, Chr08G013470, Chr23G008960, Chr25G010700 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G660800, Tel3E01G452500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG055500, gene_TRIDC2BG058290 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G385400.2, TraesCS2B02G402300.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb157090_P001, Zm00001eb360110_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-37047, nbis-gene-41712 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20024, Zma_g26600 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.1187, evm.TU.LG12.522, evm.TU.LG19.271 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g02630 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15710 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21148 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-826 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.601 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007227 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15163 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4350 |
| Salicaceae | Populus euphratica | 1 | populus_peu34883 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609156 |
| Solanaceae | Solanum chilense | 1 | SOLCI004502900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031736 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.3481_chr02_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0097 |
| Zosteraceae | Zostera marina | 1 | Zosma03g27390.v3.1 |