Basic Information
Locus ID:
gene_5436
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
AFC2
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 21816831 | 21821203 | - | gene_5436 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 50,319.08 Da | 43.48 | 82.25 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14134 | PKc_CLK | 89 | 429 | 0.0 | - |
| Pfam | PF00069 | Protein kinase domain | 102 | 429 | 4.2E-49 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 89 | 432 | 2.53E-78 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 89 | 182 | 6.6E-112 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 156 | 429 | 6.6E-112 | - |
| SMART | SM00220 | serkin_6 | 102 | 429 | 1.5E-76 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 102 | 429 | 37.304585 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 223 | 235 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 73 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24740.1 | FUS3-complementing gene 2. a LAMMER-type protein kinase that co-precipitates with serine/arginine-rich (SR) proteins in vitro, interaction modulated by phosphorylation of the proteins. | 0 |
| RefSeq | XP_048503746.1 | serine/threonine-protein kinase AFC2-like isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| P51567 | Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana OX=3702 GN=AFC2 PE=1 SV=1 | 0 | |
| TrEMBL | Q9M598 | Protein kinase MK5 OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology