Basic Information
Locus ID:
gene_5423
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
neutrophil clearance
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 21543382 | 21546441 | - | gene_5423 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 102,353.82 Da | 38.56 | 88.19 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 601 | 876 | 1.29722E-93 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 45 | 80 | 2.8E-6 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 340 | 378 | 3.2E-5 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 596 | 870 | 1.0E-44 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 582 | 885 | 1.62E-76 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 67 | 449 | 3.51E-49 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 673 | 890 | 6.4E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 44 | 335 | 1.7E-73 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 559 | 672 | 1.2E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 341 | 466 | 1.6E-31 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 153 | 178 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 202 | 225 | 0.34 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 106 | 128 | 43.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 404 | 428 | 74.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 129 | 152 | 15.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 595 | 877 | 1.5E-41 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 595 | 877 | 40.329262 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 601 | 623 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 720 | 732 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 463 | 495 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_010685103.2 | receptor-like kinase TMK4 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RIU5 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_061690 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology