Basic Information
Locus ID:
gene_5399
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Cleavage and polyadenylation specificity factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 21217756 | 21226606 | - | gene_5399 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 60,289.65 Da | 35.76 | 85.84 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16291 | INTS11-like_MBL-fold | 5 | 203 | 2.38599E-127 | IPR041897 |
| Pfam | PF07521 | Zn-dependent metallo-hydrolase RNA specificity domain | 378 | 438 | 1.5E-16 | IPR011108 |
| Pfam | PF16661 | Metallo-beta-lactamase superfamily domain | 21 | 192 | 2.3E-17 | IPR001279 |
| Pfam | PF10996 | Beta-Casp domain | 244 | 362 | 6.1E-22 | IPR022712 |
| SUPERFAMILY | SSF56281 | Metallo-hydrolase/oxidoreductase | 4 | 447 | 8.65E-139 | IPR036866 |
| Gene3D | G3DSA:3.60.15.10 | - | 8 | 427 | 7.1E-136 | IPR036866 |
| Gene3D | G3DSA:3.40.50.10890 | - | 212 | 392 | 7.1E-136 | - |
| SMART | SM01027 | Beta_Casp_2 | 244 | 362 | 1.2E-35 | IPR022712 |
| SMART | SM00849 | Lactamase_B_5a | 15 | 232 | 5.6E-22 | IPR001279 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01730.1 | cleavage and polyadenylation specificity factor 73 kDa subunit-II. a homolog of cleavage and polyadenylation specificity factor that plays an essential role in the development of female gametophyte and embryo | 0 |
| RefSeq | XP_010694370.1 | cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8GUU3 | Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thaliana OX=3702 GN=CPSF73-II PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J5AQA6 | Cleavage and polyadenylation specificity factor subunit 3-II OS=Nyssa sinensis OX=561372 GN=F0562_032680 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9731 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5399 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003441 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39238, Sbi_jg54555 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11091 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00019632, GOSA_00019634 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl15128, Sgl20281, Sgl35697, Sgl35770, Sgl41081 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006204, gene:ENSEOMG00000021036 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0009710, CQ.Regalona.r1.5BG0010130 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30218360, pistato.v30218370 |
| Apiaceae | Apium graveolens | 2 | Ag4G02647, Ag8G01881 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G002150 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706807 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G23988 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G01730.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005303m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g13180.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g009470.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0129 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0135 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g04430 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0152s00021.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g05150 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1237 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002414 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G14200, Lb2G14217 |
| Poaceae | Echinochloa crus-galli | 4 | AH03.1841, BH03.2077, CH03.2190, CH03.2191 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0534520, gene-QOZ80_6BG0487650 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0478980.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_004961, gene-QYE76_004980, gene-QYE76_004986 |
| Poaceae | Oryza coarctata | 2 | Oco17G004350, Oco18G004270 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g23380.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G176000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702284, Pt_Chr0702302 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G010500, Chr11G011860 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G339500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG032900, gene_TRIDC5BG034730 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G203800.1, TraesCS5B02G202500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb159740_P004 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-30905, nbis-gene-57746 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30275 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG13.1186, evm.TU.LG21.856, evm.TU.LG21.857 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g06310 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.248 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26470 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3468 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17567 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.153 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004643 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11570 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2705 |
| Salicaceae | Populus euphratica | 1 | populus_peu21214 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613683 |
| Solanaceae | Solanum chilense | 1 | SOLCI003966400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017849 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.17150_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3639 |
| Zosteraceae | Zostera marina | 1 | Zosma01g23270.v3.1 |