Basic Information
Locus ID:
gene_5389
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Small ubiquitin-related modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 21070803 | 21075057 | - | gene_5389 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 11,246.38 Da | 45.32 | 62.16 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 23 | 96 | 1.77712E-48 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 25 | 95 | 4.0E-24 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 14 | 100 | 5.54E-28 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 23 | 101 | 4.9E-39 | - |
| SMART | SM00213 | ubq_7 | 25 | 96 | 8.5E-14 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 23 | 100 | 16.428747 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 0 |
| RefSeq | XP_010069640.1 | small ubiquitin-related modifier 1 [Eucalyptus grandis] | 0 |
| P55852 | Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8B8QL93 | Small ubiquitin-related modifier OS=Rhodamnia argentea OX=178133 GN=LOC115753372 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology