Basic Information
Locus ID:
gene_534
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 92825684 | 92837120 | - | gene_534 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.68 | 46,324.86 Da | 49.88 | 65.72 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 56 | 126 | 1.87101E-36 | - |
| CDD | cd12619 | RRM2_PUB1 | 140 | 214 | 3.35524E-52 | - |
| CDD | cd12354 | RRM3_TIA1_like | 260 | 335 | 4.52259E-34 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 141 | 211 | 3.4E-18 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 262 | 328 | 9.1E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 56 | 122 | 5.8E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 252 | 345 | 1.33E-20 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 38 | 132 | 1.01E-24 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 133 | 226 | 1.11E-27 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 138 | 218 | 8.4E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 236 | 339 | 9.4E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 137 | 1.6E-23 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 261 | 331 | 8.0E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 55 | 124 | 1.6E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 140 | 213 | 2.1E-24 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 139 | 217 | 17.199404 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 54 | 128 | 15.579141 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 260 | 335 | 14.760482 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 256 | - | - |
| Coils | Coil | Coil | 3 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_027125672.1 | oligouridylate-binding protein 1B-like [Coffea arabica] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P6XI40 | oligouridylate-binding protein 1B-like OS=Coffea arabica OX=13443 GN=LOC113742145 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology