Basic Information
Locus ID:
gene_5317
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 19526381 | 19534920 | - | gene_5317 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 46,383.19 Da | 48.66 | 79.01 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 181 | 403 | 3.16207E-45 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 228 | 263 | 0.019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 181 | 218 | 1.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 325 | 361 | 0.0071 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 367 | 403 | 1.3E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 267 | 306 | 0.0012 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 177 | 404 | 3.66E-51 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 315 | 413 | 3.2E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 173 | 314 | 2.5E-34 | IPR015943 |
| SMART | SM00320 | WD40_4 | 179 | 218 | 1.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 361 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 266 | 307 | 4.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 224 | 263 | 1.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 364 | 404 | 1.3E-10 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 371 | 403 | 14.184453 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 186 | 219 | 9.941962 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 19 | 51 | 7.720071 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 231 | 272 | 14.351543 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 231 | 267 | 11.049229 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 371 | 413 | 12.947401 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 186 | 219 | 11.912015 | IPR001680 |
| Coils | Coil | Coil | 108 | 128 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021722150.1 | WD repeat-containing protein 26-like [Chenopodium quinoa] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8YVP9 | WD repeat-containing protein 26 OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology