Basic Information
Locus ID:
gene_5299
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 19259313 | 19268812 | - | gene_5299 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 71,022.52 Da | 48.29 | 64.87 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 171 | 490 | 2.4714E-46 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 170 | 204 | 1.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 328 | 354 | 0.041 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 271 | 306 | 5.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 366 | 400 | 1.2E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 156 | 488 | 8.61E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 260 | 502 | 2.1E-39 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 137 | 259 | 3.8E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 211 | 251 | 6.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 263 | 306 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 165 | 204 | 4.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 310 | 354 | 0.91 | IPR001680 |
| SMART | SM00320 | WD40_4 | 361 | 400 | 1.1E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 273 | 315 | 12.74747 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 368 | 409 | 14.852817 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 172 | 206 | 9.783781 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 273 | 308 | 10.258324 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 172 | 206 | 11.711506 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 368 | 402 | 11.866497 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 341 | 355 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 293 | 307 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 387 | 401 | 1.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 293 | 307 | 1.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 341 | 355 | 1.0E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 537 | 577 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 539 | 560 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 620 | 643 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G20330.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_010684785.2 | WD repeat-containing protein 70 [Beta vulgaris subsp. vulgaris] | 0 |
| Q0VA16 | WD repeat-containing protein 70 OS=Xenopus tropicalis OX=8364 GN=wdr70 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8Z8Z2 | WD_REPEATS_REGION domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg35466 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5299 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah008291, Ah029140 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g166120 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1080, Sbi_jg35495 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3615 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023416 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl74394, Sgl77947 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006861, gene:ENSEOMG00000035958 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0011360, CQ.Regalona.r1.7BG0013540 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30015270 |
| Apiaceae | Apium graveolens | 1 | AgUnG00372 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G009130, COCNU_10G007030 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702888, gene-LOC120103802 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.246.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G08280 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G20330.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001927m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g33570.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g069850.2N, BniB04g024500.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2287 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2398 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g03110 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0250s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g11210 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6373, nbisL1-mrna-9691 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1650 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015176 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1842, BH01.2157, CH01.2252 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0127030, gene-QOZ80_2BG0182590 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0040830.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011402 |
| Poaceae | Oryza coarctata | 2 | Oco19G005550, Oco20G005470 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g32710.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G212400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502524 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr09G010460, Chr0G025820, Chr0G029750 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G274300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG022220, gene_TRIDC1BG026960 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G146200.1, TraesCS1B02G164300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb222270_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21223 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13350 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.522, evm.TU.LG04.245 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g02040 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1062 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21121 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9000 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7272 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.425 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009808 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1409 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4993 |
| Salicaceae | Populus euphratica | 2 | populus_peu26658, populus_peu26718 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132605711 |
| Solanaceae | Solanum chilense | 1 | SOLCI004841200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023476 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31680_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1046 |
| Zosteraceae | Zostera marina | 1 | Zosma01g34700.v3.1 |