Basic Information
Locus ID:
gene_5293
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 73127997 | 73152806 | - | gene_5293 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 57,136.08 Da | 53.21 | 83.70 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 331 | 508 | 2.61093E-114 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 330 | 437 | 3.4E-19 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 14 | 100 | 9.1E-13 | IPR015063 |
| SUPERFAMILY | SSF140856 | USP8 N-terminal domain-like | 17 | 116 | 8.76E-5 | - |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 333 | 464 | 3.79E-20 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 317 | 508 | 8.7E-72 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 2 | 121 | 6.4E-33 | - |
| SMART | SM00232 | pad1_6 | 333 | 461 | 1.2E-17 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 334 | 464 | 29.326031 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 328 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_021750517.1 | AMSH-like ubiquitin thioesterase 3 [Chenopodium quinoa] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9ELE0 | MPN domain-containing protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology