HalophFGD

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Basic Information
Locus ID: gene_5285
Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544
Genome Assembly: Koichi Toyokura Assembly
Description: rRNA N-glycosidase
Maps and Mapping Data
Chromosome Start End Strand ID
Super-Scaffold_15_Chr_7S 19094792 19096657 - gene_5285
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.17 36,920.74 Da 33.68 89.22 -0.46
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00161 Ribosome inactivating protein 77 265 1.5E-20 IPR001574
SUPERFAMILY SSF56371 Ribosome inactivating proteins (RIP) 65 268 3.41E-23 IPR036041
Gene3D G3DSA:3.40.420.10 Ricin (A subunit), domain 1 59 234 1.0E-20 IPR016138
Gene Ontology
Biological Process:
GO:0017148 (negative regulation of translation)
Molecular Function:
GO:0030598 (rRNA N-glycosylase activity)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_010675818.1 60 kDa jasmonate-induced protein [Beta vulgaris subsp. vulgaris] 0
TrEMBL A0A0K9QB12 rRNA N-glycosylase OS=Spinacia oleracea OX=3562 GN=SOVF_206640 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Aizoaceae Mesembryanthemum crystallinum 1 gene_5285
Arecaceae Cocos nucifera 2 COCNU_08G005590, contig69358227G000010
Arecaceae Phoenix dactylifera 2 gene-LOC103696813, gene-LOC120104334
Plumbaginaceae Limonium bicolor 5 Lb2G11260, Lb3G18653, Lb4G25712, Lb6G29913, Lb6G30260
Poaceae Echinochloa crus-galli 7 AH05.2679, AH09.116, BH02.2643, BH04.679, BH04.682 ...
BH05.2772, CH02.3888
Poaceae Eleusine coracana subsp. coracana 10 gene-QOZ80_1AG0010670, gene-QOZ80_1AG0010680 ...
gene-QOZ80_1BG0059180, gene-QOZ80_1BG0059190, gene-QOZ80_1BG0059200, gene-QOZ80_5AG0375470, gene-QOZ80_5AG0404620, gene-QOZ80_7AG0559480, gene-QOZ80_7BG0590780, gene-QOZ80_9BG0699670
Poaceae Hordeum vulgare 7 HORVU.MOREX.r3.1HG0059440.1.CDS1 ...
HORVU.MOREX.r3.4HG0349720.1.CDS1, HORVU.MOREX.r3.5HG0520010.1.CDS1, HORVU.MOREX.r3.5HG0525770.1.CDS1, HORVU.MOREX.r3.5HG0525790.1.CDS1, HORVU.MOREX.r3.7HG0685280.1.CDS1, HORVU.MOREX.r3.7HG0731900.1.CDS1
Poaceae Lolium multiflorum 6 gene-QYE76_017620, gene-QYE76_018881, gene-QYE76_020496 ...
gene-QYE76_027015, gene-QYE76_035671, gene-QYE76_059141
Poaceae Oryza coarctata 5 Oco01G002570, Oco02G002460, Oco02G002620, Oco13G004140 ...
Oco14G004790
Poaceae Oryza sativa 4 LOC_Os01g06740.1, LOC_Os07g09070.1, LOC_Os11g06490.1 ...
LOC_Os11g06630.1
Poaceae Paspalum vaginatum 3 gene-BS78_05G008100, gene-BS78_06G018300, gene-BS78_K036200
Poaceae Puccinellia tenuiflora 5 Pt_Chr0300096, Pt_Chr0300140, Pt_Chr0307128, Pt_Chr0604834 ...
Pt_Chr0702485
Poaceae Sporobolus alterniflorus 3 Chr09G008370, Chr23G018840, Chr26G000910
Poaceae Thinopyrum elongatum 3 Tel1E01G016500, Tel5E01G754000, Tel6E01G047400
Poaceae Triticum dicoccoides 7 gene_TRIDC1AG035240, gene_TRIDC5AG067880 ...
gene_TRIDC5AG067930, gene_TRIDC5BG073200, gene_TRIDC5BG073240, gene_TRIDC5BG073250, gene_TRIDC7AG062160
Poaceae Triticum aestivum 19 TraesCS1A02G234300.1.cds1, TraesCS1B02G249200.1 ...
TraesCS1D02G237700.1.cds1, TraesCS5A02G474900.1, TraesCS5A02G475300.1.cds1, TraesCS5A02G475400.1.cds1, TraesCS5A02G475500.1, TraesCS5B02G488300.1, TraesCS5B02G488400.1.cds1, TraesCS5B02G488500.1.cds1, TraesCS5B02G488600.1, TraesCS5B02G488700.1.cds1, TraesCS5B02G488800.1.cds1, TraesCS5D02G487600.1.cds1, TraesCS5D02G487700.1.cds1, TraesCS6D02G014500.1.cds1, TraesCS7A02G448400.1, TraesCSU02G183200.1.cds1, TraesCSU02G183400.1.cds1
Poaceae Zea mays 4 Zm00001eb089930_P001, Zm00001eb092600_P002 ...
Zm00001eb326540_P001, Zm00001eb350070_P001
Poaceae Zoysia japonica 5 nbis-gene-35947, nbis-gene-48487, nbis-gene-51497 ...
nbis-gene-52906, nbis-gene-6893
Poaceae Zoysia macrostachya 2 Zma_g10001, Zma_g26746
Salicaceae Populus euphratica 2 populus_peu15557, populus_peu15561
Tamaricaceae Reaumuria soongarica 2 STRG.25961_chr11_-, STRG.26439_chr11_+
Tamaricaceae Tamarix chinensis 6 TC10G1896, TC10G1897, TC10G1898, TC10G1900, TC10G1903 ...
TC10G1904
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.