Basic Information
Locus ID:
gene_5256
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 68013022 | 68016420 | - | gene_5256 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 41,329.62 Da | 52.40 | 93.42 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 311 | 353 | 7.44143E-17 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 26 | 93 | 4.2E-13 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 310 | 353 | 2.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 302 | 359 | 4.04E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 272 | 358 | 8.0E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 311 | 352 | 6.7E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 311 | 353 | 12.666314 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_019260537.1 | PREDICTED: putative RING-H2 finger protein ATL21A [Nicotiana attenuata] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A314LDF8 | Putative ring-h2 finger protein atl21a OS=Nicotiana attenuata OX=49451 GN=ATL21A_4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology