Basic Information
Locus ID:
gene_5255
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 68006292 | 68008081 | - | gene_5255 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 41,723.15 Da | 57.10 | 89.81 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 312 | 354 | 4.73612E-16 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 26 | 93 | 1.2E-14 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 311 | 354 | 1.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 304 | 360 | 2.17E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 273 | 359 | 7.4E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 312 | 353 | 5.7E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 312 | 354 | 12.607302 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015878200.2 | putative RING-H2 finger protein ATL21A [Ziziphus jujuba var. spinosa] | 0 |
| P0CH02 | Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana OX=3702 GN=ATL21B PE=3 SV=1 | 0 | |
| TrEMBL | A0A5J5ATF0 | RING-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_030947 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology