Basic Information
Locus ID:
gene_5194
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 49493704 | 49533485 | - | gene_5194 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.55 | 48,450.80 Da | 28.05 | 70.89 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11715 | Nucleoporin Nup120/160 | 287 | 367 | 1.2E-4 | - |
| Pfam | PF18044 | CCCH-type zinc finger | 125 | 145 | 1.9E-8 | IPR041367 |
| Pfam | PF00400 | WD domain, G-beta repeat | 155 | 191 | 5.7E-5 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 121 | 146 | 1.31E-7 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 152 | 442 | 4.52E-46 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 245 | 447 | 1.2E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 147 | 237 | 4.8E-10 | IPR015943 |
| Gene3D | G3DSA:4.10.1000.10 | - | 121 | 146 | 3.2E-5 | - |
| Gene3D | G3DSA:3.30.1370.210 | - | 14 | 65 | 1.2E-5 | - |
| SMART | SM00356 | c3hfinal6 | 123 | 147 | 1.9E-6 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 34 | 57 | 0.031 | IPR000571 |
| SMART | SM00320 | WD40_4 | 231 | 268 | 9.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 356 | 399 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 315 | 352 | 3.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 275 | 312 | 0.0018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 152 | 191 | 6.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 403 | 439 | 34.0 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 121 | 148 | 15.609943 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 282 | 315 | 9.731054 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 159 | 191 | 10.811958 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 32 | 58 | 9.60092 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 159 | 200 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 282 | 321 | 12.714052 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 299 | 313 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 339 | 353 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 178 | 192 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 299 | 313 | 1.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 117 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_052185440.1 | zinc finger CCCH domain-containing protein 48-like [Diospyros lotus] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A1VD35 | Zinc finger CCCH domain-containing protein 48 OS=Morella rubra OX=262757 GN=CJ030_MR6G019847 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology