Basic Information
Locus ID:
gene_5190
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
transcription regulatory region sequence-specific DNA binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 49003510 | 49004334 | - | gene_5190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.84 | 9,689.29 Da | 38.12 | 108.07 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 60 | 6.74099E-38 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 3.7E-26 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 64 | 3.14E-29 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 76 | 1.1E-24 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 7.6E-40 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 32.029339 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 1.6E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 1.6E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 1.6E-31 | IPR002100 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62165.14 | - | 0 |
| RefSeq | XP_021804055.1 | MADS-box protein AGL42-like [Prunus avium] | 0 |
| Q9FIS1 | MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1 | 0 | |
| TrEMBL | A0A438CUW3 | MADS-box protein AGL42 OS=Vitis vinifera OX=29760 GN=AGL42_1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology