Basic Information
Locus ID:
gene_5188
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
lysM domain receptor-like kinase 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 16651686 | 16655853 | - | gene_5188 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.16 | 77,237.74 Da | 33.38 | 86.12 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01476 | LysM domain | 214 | 257 | 0.0036 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 406 | 674 | 7.9E-37 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 372 | 675 | 1.34E-59 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 372 | 462 | 3.1E-14 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 464 | 690 | 3.0E-48 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 211 | 267 | 7.8E-6 | IPR036779 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 394 | 683 | 30.633337 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 212 | 256 | 9.924049 | IPR018392 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 348 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_010681495.2 | protein LYK5 [Beta vulgaris subsp. vulgaris] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9ALC6 | Protein kinase domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology