Basic Information
Locus ID:
gene_5187
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
lysM domain receptor-like kinase 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 16635775 | 16643930 | - | gene_5187 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 137,945.73 Da | 33.41 | 89.45 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 979 | 1241 | 6.4E-36 | IPR000719 |
| Pfam | PF01476 | LysM domain | 214 | 257 | 0.0014 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 415 | 589 | 9.7E-34 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 364 | 617 | 1.05E-55 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 953 | 1241 | 4.21E-58 | IPR011009 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 211 | 262 | 3.8E-5 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 450 | 609 | 2.6E-40 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 355 | 448 | 3.4E-12 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1037 | 1255 | 7.6E-47 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 942 | 1035 | 3.9E-15 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 920 | 1245 | 28.159887 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 281 | 636 | 26.152859 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 808 | 853 | 9.181201 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 212 | 256 | 10.961233 | IPR018392 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_010681495.2 | protein LYK5 [Beta vulgaris subsp. vulgaris] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9ALC6 | Protein kinase domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology