Basic Information
Locus ID:
gene_5174
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
PEK GCN2 protein kinase Gcn2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 16284599 | 16291527 | - | gene_5174 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.55 | 48,451.41 Da | 43.90 | 68.57 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 159 | 435 | 3.9E-38 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 150 | 441 | 3.64E-52 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 264 | 448 | 3.6E-32 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 146 | 263 | 3.0E-27 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 157 | 436 | 32.484894 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 163 | 187 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 85 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59410.5 | - | 0 |
| RefSeq | XP_039124236.1 | eIF-2-alpha kinase GCN2 isoform X2 [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q9LX30 | eIF-2-alpha kinase GCN2 OS=Arabidopsis thaliana OX=3702 GN=GCN2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2H5QBU8 | Non-specific serine/threonine protein kinase OS=Citrus unshiu OX=55188 GN=CUMW_215170 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_5174, gene_6300, gene_8947 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2AG0011330 |
| Apiaceae | Apium graveolens | 1 | Ag10G00818 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0137s00011.v1.0, Dusal.0200s00004.v1.0 |