Basic Information
Locus ID:
gene_5164
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 16004914 | 16014040 | - | gene_5164 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 34,345.29 Da | 50.98 | 46.38 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 42 | 122 | 2.8E-20 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 224 | 281 | 1.8E-25 | IPR039512 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 177 | 219 | 9.4E-7 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 113 | 170 | 6.93E-20 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 176 | 224 | 1.28E-10 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 38 | 111 | 6.67E-18 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 162 | 247 | 5.5E-11 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 248 | 290 | 1.7E-17 | - |
| SMART | SM00184 | ring_2 | 177 | 219 | 2.4E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 35 | 110 | 24.879049 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 177 | 220 | 11.899158 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 112 | 176 | 32.190838 | IPR017921 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 30 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62970.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_021851771.1 | E3 ubiquitin-protein ligase MIEL1-like [Spinacia oleracea] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RX36 | RING finger and CHY zinc finger domain-containing protein 1 OS=Spinacia oleracea OX=3562 GN=SOVF_019950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology