Basic Information
Locus ID:
gene_5152
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
WRKY Transcription Factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 15702834 | 15709331 | - | gene_5152 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.15 | 55,198.88 Da | 51.56 | 50.53 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03106 | WRKY DNA -binding domain | 228 | 284 | 6.3E-25 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 398 | 455 | 3.2E-24 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 389 | 457 | 1.96E-28 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 225 | 286 | 1.01E-25 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 221 | 287 | 5.2E-28 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 382 | 458 | 8.6E-35 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 227 | 285 | 5.6E-36 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 397 | 456 | 7.2E-37 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 392 | 457 | 38.032722 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 222 | 286 | 23.743359 | IPR003657 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 216 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 297 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13960.1 | WRKY DNA-binding protein 4. Encodes WRKY DNA-binding protein 4 (WRKY4). | 0 |
| RefSeq | XP_010670218.3 | probable WRKY transcription factor 4 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9XI90 | Probable WRKY transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=WRKY4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LSC9 | WRKY domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology