Basic Information
Locus ID:
gene_5125
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 15049793 | 15063658 | - | gene_5125 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 62,258.20 Da | 42.49 | 79.65 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 215 | 565 | 1.0E-45 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 211 | 567 | 8.83E-71 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 206 | 569 | 1.0E-78 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 215 | 568 | 37.828709 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 216 | 231 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 510 | 528 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 98 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G30890.1 | ubiquitin-specific protease 24. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021852330.1 | ubiquitin carboxyl-terminal hydrolase 24 [Spinacia oleracea] | 0 |
| Q9FPS3 | Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabidopsis thaliana OX=3702 GN=UBP24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8Z538 | Ubiquitin carboxyl-terminal hydrolase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg16327, jg16328, jg29870, jg37704 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5125 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023581 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g005320 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg28927, Sbi_jg3009 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6880 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000931 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl11845, Sgl15946, Sgl16896 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015301, gene:ENSEOMG00000034551 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0016070 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30229490 |
| Apiaceae | Apium graveolens | 2 | Ag1G01032, Ag9G01493 |
| Arecaceae | Cocos nucifera | 3 | COCNU_16G002580, contig69624671G000010 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103695455, gene-LOC103714682, gene-LOC120109027 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1569.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G10199, Ftri16G34059 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G30890.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025311m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g28760.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g010790.2N, BniB05g006940.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0831 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0844 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g00850, gene.Cymno03g13540 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0016s00029.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g32420, gene.Thate07g00420 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3620 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.123 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00014393, Pov_00014858, Pov_00015642, Pov_00028635 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02290 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3970, BH03.4272, CH07.225 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0213730, gene-QOZ80_3BG0258850 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0116440.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_039044, gene-QYE76_039045 |
| Poaceae | Oryza coarctata | 2 | Oco13G014950, Oco14G015770 |
| Poaceae | Oryza sativa | 2 | LOC_Os07g46660.1, LOC_Os11g34270.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G379100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0305092, Pt_Chr0305143 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr0G020960, Chr0G021330, Chr19G000800, Chr24G013170 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G265100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG015650, gene_TRIDC2BG018810 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G127200.3, TraesCS2B02G149000.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb110870_P001, Zm00001eb329890_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-33182 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5725, Zma_g7014 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.192, evm.TU.LG04.560 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g33240 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1439 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-8519 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5641 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15229 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.160 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003201 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9501 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18808 |
| Salicaceae | Populus euphratica | 1 | populus_peu35111 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132643621, gene-LOC132644843 |
| Solanaceae | Solanum chilense | 2 | SOLCI005880000, SOLCI005923600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002891, gene-LOC107008165 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8541 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0394 |
| Zosteraceae | Zostera marina | 1 | Zosma03g13400.v3.1 |