Basic Information
Locus ID:
gene_5036
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
C-type lectin receptor-like tyrosine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 11572859 | 11588480 | - | gene_5036 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.41 | 64,940.25 Da | 47.44 | 86.75 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00037 | CLECT | 84 | 206 | 2.55839E-19 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 310 | 565 | 2.8E-39 | IPR001245 |
| Pfam | PF00059 | Lectin C-type domain | 93 | 207 | 3.9E-13 | IPR001304 |
| SUPERFAMILY | SSF56436 | C-type lectin-like | 23 | 209 | 1.11E-21 | IPR016187 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 264 | 565 | 1.37E-61 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 265 | 364 | 7.1E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 365 | 573 | 8.0E-50 | - |
| Gene3D | G3DSA:3.10.100.10 | - | 52 | 210 | 1.9E-20 | IPR016186 |
| SMART | SM00034 | CLECT_2 | 72 | 207 | 2.5E-16 | IPR001304 |
| SMART | SM00219 | tyrkin_6 | 301 | 565 | 4.1E-13 | IPR020635 |
| ProSiteProfiles | PS50041 | C-type lectin domain profile. | 81 | 207 | 14.1828 | IPR001304 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 289 | 566 | 31.382439 | IPR000719 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 411 | 423 | - | IPR008266 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G52310.1 | protein kinase family protein / C-type lectin domain-containing protein. | 0 |
| RefSeq | XP_021857032.1 | C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Spinacia oleracea] | 0 |
| Q9C823 | C-type lectin receptor-like tyrosine-protein kinase At1g52310 OS=Arabidopsis thaliana OX=3702 GN=At1g52310 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7BD10 | C-type lectin receptor-like tyrosine-protein kinase OS=Davidia involucrata OX=16924 GN=Din_036261 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21134 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5036 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036675 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g012420 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg40278 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1859 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011435 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl00271 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008232, gene:ENSEOMG00000035921 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0016920, CQ.Regalona.r1.7BG0019690 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30079970, pistato.v30258490 |
| Apiaceae | Apium graveolens | 2 | Ag7G00468, Ag9G02523 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G006460 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722321 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1232.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G32811 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G52310.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011366m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g38840.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g003570.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1661 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1717 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g10850 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g11860 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.340 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012906 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G33457 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.1088, BH02.1024, CH02.1132 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0006290, gene-QOZ80_1BG0055010 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0231480.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_021313, gene-QYE76_054346 |
| Poaceae | Oryza coarctata | 2 | Oco01G000220, Oco02G000220 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g01410.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G095800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0202136, Pt_Chr0202179, Pt_Chr0303748 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G025530, Chr03G002600, Chr05G003260, Chr08G002470 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G143100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG009380, gene_TRIDC3BG013250 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G078700.1, TraesCS3B02G093800.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb126930_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7208 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9798 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.803, evm.TU.LG20.1088 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g07080 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.1026 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13465 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14007 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9258 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.285 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003969 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3659 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7681 |
| Salicaceae | Populus euphratica | 1 | populus_peu02981 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623155 |
| Solanaceae | Solanum chilense | 1 | SOLCI004803600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011711 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.9233_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1001 |
| Zosteraceae | Zostera marina | 1 | Zosma02g14980.v3.1 |