Basic Information
Locus ID:
gene_4996
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
nucleic acid binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 1202346 | 1207084 | - | gene_4996 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 29,224.32 Da | 26.96 | 65.55 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 66 | 6.5E-8 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 7 | 85 | 6.11E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 74 | 2.1E-10 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 74 | 2.1E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 78 | 11.110626 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 260 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_021725827.1 | binding partner of ACD11 1-like [Chenopodium quinoa] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KSR6 | RRM domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology