Basic Information
Locus ID:
gene_485
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
MADS-box protein SOC1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 87350195 | 87351912 | - | gene_485 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.02 | 7,969.38 Da | 44.48 | 89.14 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 61 | 2.02188E-37 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 5.1E-27 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 63 | 2.09E-30 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 69 | 1.7E-25 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 1.2E-40 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 32.043358 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 5.6E-32 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 5.6E-32 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 5.6E-32 | IPR002100 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62165.14 | - | 0 |
| RefSeq | XP_019234497.1 | PREDICTED: MADS-box protein AGL42-like [Nicotiana attenuata] | 0 |
| Q38838 | Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana OX=3702 GN=AGL14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A830BAQ9 | Mads-box protein soc1 OS=Phtheirospermum japonicum OX=374723 GN=PHJA_000619900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology