Basic Information
Locus ID:
gene_4819
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 38345606 | 38351700 | - | gene_4819 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 59,369.96 Da | 50.08 | 62.46 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 271 | 334 | 1.11683E-22 | - |
| CDD | cd16872 | ARID_HMGB9-like | 35 | 120 | 7.67073E-46 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 271 | 338 | 8.7E-15 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 36 | 120 | 1.9E-18 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 31 | 131 | 4.71E-29 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 264 | 343 | 1.28E-21 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 254 | 350 | 4.0E-21 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 19 | 130 | 5.4E-27 | IPR036431 |
| SMART | SM01014 | ARID_2 | 30 | 120 | 3.0E-29 | - |
| SMART | SM00501 | bright_3 | 34 | 125 | 1.1E-27 | IPR001606 |
| SMART | SM00398 | hmgende2 | 270 | 339 | 3.1E-19 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 33 | 124 | 26.769611 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 271 | 338 | 15.356516 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 442 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 537 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 432 | - | - |
| Coils | Coil | Coil | 320 | 340 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_010673418.2 | high mobility group B protein 15 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8CMU6 | High mobility group B protein 15-like OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_3g065800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology